species:   Rhsol
pid:       PID0617
parent:    Rhi-milR-119
paralog:   
locus:     KB317777.1:7095-7207
matures:   ['UCAUUCAAGGGAGCGGAACAA', 'CAUCCGUUCCUUUGAGUACU']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317777.1:7095-7207

1 out of bounds
33 alignments
30 proper strand
23 stranded perfect matches

                 **************************                           *************************                  
CUUGGGAUUUCUCUCCAAGUCAUUCAAGGGAGCGGAACAAAACUACAACACACACAACAAGGAACUCCUUGCUAUCAUCCGUUCCUUUGAGUACUGGCAAACAUUUCUGGAAG
.((.(((.......(((.((.(((((((((((((((.....................(((((....)))))......))))))))))))))))))))........))).))..
-------------------UCAUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------------------------------CAUCCGUUCCUUUGAGUACU------------------ l=20 a=0 c*
-------------------UCAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=14 ma
------------------------------------------------------------------------UAUCAUCCGUUCCUUUGAGUACU------------------ l=23 a=0 ma*

--------------------------------------------------------------------------UCAUCCGUUCCUUUGAaUACUGGC--------------- l=24 a=1 
---------------------------------------------------------CAAGGAACUCCUUGCUAUCAUCC--------------------------------- l=23 a=1 
--------------------------------------------------------ACAAGGAACUCCUUGCgAUCAU----------------------------------- l=22 a=1 
-----------------------UCAAGGGAGCGGAACAAAACUA-------------------------------------------------------------------- l=22 a=1 
----------------------UUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=21 a=1 
---------------------AUUCAAGGGAGCGaAACAAAAC---------------------------------------------------------------------- l=22 a=1 
--------------------CAUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=20 a=1 
--------------------CAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=23 a=1 
-------------------UCAUUCAAGGGAGCGGAACAAA------------------------------------------------------------------------ l=22 a=1 
-------------------UCuUUCAAGGGAGCGGAACAAA------------------------------------------------------------------------ l=22 a=1 
-------------------UCAUUCAAGGGAGCGGAACAAAA----------------------------------------------------------------------- l=23 a=2 
-------------------UCuUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=2 
-------------------UCAUUCAAGGGAGCGGAACAAAAC---------------------------------------------------------------------- l=24 a=14 (ma)
-------------------UCAUUCAAGGGAGCGaAACAAAAC---------------------------------------------------------------------- l=24 a=1 
-----------------AGUCAUUCAAGGGAGCGGAACAA------------------------------------------------------------------------- l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-111111101110
fn-111
